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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3920155_3921134_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3920155 - 3921134
Intron Length:
980

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCACTAATG
Flanking Amino Acid:
AVFILFYPAMMFVSRLTAYF
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
85.8
25.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
89.4
0.89
0.8
88
29.4
Minor 5ss
42
-0.9
2.9
55
43.6
Minor BPS
60.1
0.18
2
73.59
38.7

Associated Gene:

Gene:
ABCC5
Ensembl Gene ID:
ENSAPLG00000003817
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004044
3908383 - 3948554
40172
ENSAPLT00000033722
3900139 - 3948670
48532