Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3937393_3937815_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3937393 - 3937815

Intron Length:

423

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTAGTGAG

5'SS Class:

strong_major

3'SS Sequence:

CTTCCTACTCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAAAAAA

U12 Branch Point Sequence:

TGCTTCCTACTC

Flanking Amino Acid:

QEPVLFSGTVRSNLDPFNQY

Intron Amino Acid Position:

1253

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.5

0.77

1.1

73.5

37.5

Major BPS

47.9

-0.1

0.9

51.7

28.4

Major PPT

0.65

0.8

70.3

Minor 5ss

28.4

-2.5

2.9

31.8

42.6

Minor BPS

47.4

-0.2

1.9

58.85

40.7

Associated Gene:

Gene:

ABCC5

Ensembl Gene ID:

ENSAPLG00000003817

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033722

3900139 - 3948670

48532

ENSAPLT00000004044

3908383 - 3948554

40172