Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3945121_3945839_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3945121 - 3945839

Intron Length:

719

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGCAGA

5'SS Class:

strong_major

3'SS Sequence:

GTTTGTTTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATATTAC

U12 Branch Point Sequence:

ATTTTGCTAACA

Flanking Amino Acid:

DRIMVLTQGQVVEFDTPSAL

Intron Amino Acid Position:

1373

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.5

0.93

0.9

38.6

Major BPS

0.4

1.1

57.8

38.6

Major PPT

0.74

0.8

81.2

36.5

Minor 5ss

38.7

-1.3

2.8

49.1

46.7

Minor BPS

52.3

0.07

2.3

74.04

37.5

Associated Gene:

Gene:

ABCC5

Ensembl Gene ID:

ENSAPLG00000003817

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033722

3900139 - 3948670

48532

ENSAPLT00000004044

3908383 - 3948554

40172