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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3951927_3957245_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3951927 - 3957245
Intron Length:
5319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTAAT
5'SS Class:
major
3'SS Sequence:
CATGTTCTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
CTTCCCTCACCT
Flanking Amino Acid:
VRYTTADGPAIWWLDPELTY
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
76.4
34
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
69.8
0.44
1
64.8
41.1
Minor 5ss
34.9
-1.7
3
52.2
44.4
Minor BPS
57.2
0.31
1.9
77.75
44.4

Associated Gene:

Gene:
RNPEPL1
Ensembl Gene ID:
ENSAPLG00000003566
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003668
3951207 - 3967345
16139