Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3962150_3963249_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3962150 - 3963249

Intron Length:

1100

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATTGCTC

5'SS Class:

major

3'SS Sequence:

TTTCTCCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCTTAT

U12 Branch Point Sequence:

TATCTTATAACG

Flanking Amino Acid:

VSKLQVKLEPGVNPSNLMNL

Intron Amino Acid Position:

494

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.1

0.5

1.1

62.4

42.1

Major BPS

82.6

0.81

0.8

71.7

Major PPT

0.92

0.6

Minor 5ss

41.5

-0.9

3.3

59.2

45.5

Minor BPS

54.6

0.01

1.7

62.68

Associated Gene:

Gene:

RNPEPL1

Ensembl Gene ID:

ENSAPLG00000003566

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003668

3951207 - 3967345

16139