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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3973776_3975100_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3973776 - 3975100
Intron Length:
1325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTACTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
TCAGCTTTAACT
Flanking Amino Acid:
RGEISWLRPQDICSTPRLFS
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.7
83.9
30.3
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
88
0.85
0.7
85.5
27.9
Minor 5ss
38.4
-1.3
2.9
48.7
47.5
Minor BPS
72
0.77
1.4
80.24
42

Associated Gene:

Gene:
CAPN10
Ensembl Gene ID:
ENSAPLG00000003326
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030876
3973571 - 3984915
11345
ENSAPLT00000003405
3973571 - 3984398
10828
ENSAPLT00000032201
3973571 - 3984398
10828