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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3975233_3975450_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3975233 - 3975450
Intron Length:
218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGAAT
5'SS Class:
major
3'SS Sequence:
TTTTTGCCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTTGTCTCGATT
Flanking Amino Acid:
LQKSKYLLNKVIPPGQPSWT
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
73.7
36.4
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
82
0.72
0.8
74.6
36.4
Minor 5ss
39.4
-1.2
3.3
56.4
48
Minor BPS
58.1
0.34
1.7
78.41
38.5

Associated Gene:

Gene:
CAPN10
Ensembl Gene ID:
ENSAPLG00000003326
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032201
3973571 - 3984398
10828
ENSAPLT00000030876
3973571 - 3984915
11345
ENSAPLT00000003405
3973571 - 3984398
10828