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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3975648_3976826_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3975648 - 3976826
Intron Length:
1179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGTGAA
5'SS Class:
major
3'SS Sequence:
TATTTTTCTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTCTAT
U12 Branch Point Sequence:
TTTTCTTCTATT
Flanking Amino Acid:
WLPLLEKAYAKVHGSYEQLW
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
71.3
34.5
Major BPS
61.5
0.29
1.3
62.1
44.1
Major PPT
85.3
0.79
0.7
81.2
30.6
Minor 5ss
32.3
-2
3.4
39.2
41
Minor BPS
61.5
0.44
1.8
83.99
37

Associated Gene:

Gene:
CAPN10
Ensembl Gene ID:
ENSAPLG00000003326
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030876
3973571 - 3984915
11345
ENSAPLT00000003405
3973571 - 3984398
10828
ENSAPLT00000032201
3973571 - 3984398
10828