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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3977727_3979446_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3977727 - 3979446
Intron Length:
1720

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
TTTGTCTTACAG
Flanking Amino Acid:
RRCWKGPWCEGGQGWSQLDP
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
72.7
44.5
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
89.8
0.9
0.7
84.2
30.9
Minor 5ss
34.7
-1.7
2.6
34.3
41.4
Minor BPS
52.6
-0
1.9
63.72
44.3

Associated Gene:

Gene:
CAPN10
Ensembl Gene ID:
ENSAPLG00000003326
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032201
3973571 - 3984398
10828
ENSAPLT00000030876
3973571 - 3984915
11345
ENSAPLT00000003405
3973571 - 3984398
10828