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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3980459_3980947_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3980459 - 3980947
Intron Length:
489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTGG
5'SS Class:
strong_major
3'SS Sequence:
GCATCTGTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTTCCTAAAAC
Flanking Amino Acid:
YQAVGLHVWKVEKKRFNLPK
Intron Amino Acid Position:
429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
71.6
40.9
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
66.9
0.38
1
57.8
43
Minor 5ss
39.7
-1.2
2.8
50.2
46
Minor BPS
72.1
0.67
1.7
83.76
35.4

Associated Gene:

Gene:
CAPN10
Ensembl Gene ID:
ENSAPLG00000003326
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032201
3973571 - 3984398
10828
ENSAPLT00000030876
3973571 - 3984915
11345
ENSAPLT00000003405
3973571 - 3984398
10828