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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3983984_3984280_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3983984 - 3984280
Intron Length:
297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
TCATTTTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCATTTTCAACA
Flanking Amino Acid:
FTVVIATKIDRKRIHSRETL
Intron Amino Acid Position:
648

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
100
1.24
0.5
100
0
Major PPT
77.1
0.61
0.9
73.6
35.5
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
60.8
0.33
1.5
67.67
39

Associated Gene:

Gene:
CAPN10
Ensembl Gene ID:
ENSAPLG00000003326
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030876
3973571 - 3984915
11345
ENSAPLT00000003405
3973571 - 3984398
10828
ENSAPLT00000032201
3973571 - 3984398
10828