Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3985041_3988374_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3985041 - 3988374

Intron Length:

3334

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

TCA|GCAGGTAAT

5'SS Class:

major

3'SS Sequence:

GTTGGCCTGACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAC

U12 Branch Point Sequence:

GTATTTTTACAA

Flanking Amino Acid:

VNKEAFLPFSLVPLEKQWGN

Intron Amino Acid Position:

342

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.2

0.31

1.4

69.2

41.7

Major BPS

86.6

0.91

0.8

77.7

36.7

Major PPT

64.2

0.32

1.1

57.6

43.3

Minor 5ss

27.9

-2.5

46.9

42.8

Minor BPS

50.5

0.01

1.7

61.56

38.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000002401

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023431

3984969 - 3993413

8445