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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3990719_3990973_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3990719 - 3990973
Intron Length:
255

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
CTTAAAATCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TTTGGCTTAAAA
Flanking Amino Acid:
IYFQATIWGRMYDAFPWLMH
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
79
35.3
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
66.8
0.38
1
58.5
40.6
Minor 5ss
37.6
-1.4
3
44.8
42.9
Minor BPS
61.6
0.36
2
76.43
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002401
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002431
3986865 - 3995327
8463