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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3990752_3991018_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
3990752 - 3991018
Intron Length:
267

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAA|GCTATTTAT
5'SS Class:
weak_major
3'SS Sequence:
CAGTTTAAAAGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTTTAAA
U12 Branch Point Sequence:
TAATCAGTAAAT
Flanking Amino Acid:
EDESFSKLIKLTFLPFGLKS
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.7
0.18
1.4
62.6
38.3
Major BPS
72.6
0.56
1.2
75.9
36.3
Major PPT
45.6
-0.2
1.7
48.2
42.7
Minor 5ss
29.7
-2.3
3.8
42.4
38.5
Minor BPS
48.6
-0
2.3
73.09
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002401
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023431
3984969 - 3993413
8445