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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4006798_4007862_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4006798 - 4007862
Intron Length:
1065

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
GTCAAACCTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTTTTGTCATT
Flanking Amino Acid:
FRADHRSLKKLAKIYGNICT
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
64.4
0.33
1
54.7
40.2
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
48.9
-0
2.3
78.3
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000586
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046958
4005223 - 4015116
9894