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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4007422_4011006_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
4007422 - 4011006
Intron Length:
3585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAGTGCTA
5'SS Class:
weak_major
3'SS Sequence:
AAAAATGTCCCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATTGACA
Flanking Amino Acid:
MGDGLLNLEIYSTYDEENMV
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50
0
1.2
48.1
41.9
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
55
0.11
1.1
43.4
46.2
Minor 5ss
35.6
-1.6
3.7
52.4
45.8
Minor BPS
70.7
0.64
1.6
79.83
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000586
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019015
4007391 - 4015116
7726