About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4008120_4008476_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
4008120 - 4008476
Intron Length:
357

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TTAATGACTGAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TAATTCTTAATG
Flanking Amino Acid:
RLQTYMWLIQGILVSNGLIW
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.9
73.6
43
Major BPS
83
0.82
0.8
82
24.9
Major PPT
59.1
0.21
1.2
58
42
Minor 5ss
31.2
-2.2
4.1
46.7
48.6
Minor BPS
72.4
0.56
1.3
69.11
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000586
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031376
4006630 - 4015116
8487