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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4011133_4012402_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4011133 - 4012402
Intron Length:
1270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAA
U12 Branch Point Sequence:
TTCTATGTAAAA
Flanking Amino Acid:
LYMVAYPDIQEKVQKELDVV
Intron Amino Acid Position:
316

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
80.1
30.7
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
92.1
0.95
0.5
89.1
19.9
Minor 5ss
35
-1.7
3.2
48.2
47.9
Minor BPS
47.5
-0.1
2.2
65.09
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000586
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031376
4006630 - 4015116
8487
ENSAPLT00000019015
4007391 - 4015116
7726
ENSAPLT00000000594
4006633 - 4015116
8484
ENSAPLT00000046958
4005223 - 4015116
9894