Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4012591_4013762_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

4012591 - 4013762

Intron Length:

1172

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACCCTAT

5'SS Class:

weak_major

3'SS Sequence:

ATCTTCTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTGAG

U12 Branch Point Sequence:

AGTGGCAGAACT

Flanking Amino Acid:

TTVLGYHLPKGTVVMANIDS

Intron Amino Acid Position:

379

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.42

1.2

42.4

Major BPS

55.8

0.15

1.5

55.1

42.1

Major PPT

86.1

0.81

0.7

80.9

30.4

Minor 5ss

50.1

2.9

73.3

43.6

Minor BPS

44.5

-0.3

2.2

65.26

44.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000000586

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019015

4007391 - 4015116

7726

ENSAPLT00000000594

4006633 - 4015116

8484

ENSAPLT00000046958

4005223 - 4015116

9894

ENSAPLT00000031376

4006630 - 4015116

8487