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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4013905_4014937_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4013905 - 4014937
Intron Length:
1033

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTGAC
U12 Branch Point Sequence:
AGGTACTTGACT
Flanking Amino Acid:
TREAFLAFSAGHRVCLGEVL
Intron Amino Acid Position:
426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.2
39.9
Major BPS
65.1
0.38
1
57
39.5
Major PPT
82.7
0.73
0.7
76.9
25
Minor 5ss
34.9
-1.7
3.5
48.2
47.9
Minor BPS
64.3
0.53
1.5
75.46
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000586
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000594
4006633 - 4015116
8484
ENSAPLT00000046958
4005223 - 4015116
9894
ENSAPLT00000031376
4006630 - 4015116
8487
ENSAPLT00000019015
4007391 - 4015116
7726