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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4020792_4021148_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4020792 - 4021148
Intron Length:
357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAACTATT
5'SS Class:
major
3'SS Sequence:
ATTATGATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
GCAACATTAATT
Flanking Amino Acid:
LAFEILTHGRGVMFSNGHLW
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.2
81.8
38.5
Major BPS
84.6
0.86
1
74
41.2
Major PPT
73.6
0.53
1
63.3
46.5
Minor 5ss
46.8
-0.3
2.7
60.7
43.8
Minor BPS
56
0.27
1.7
67.88
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021716
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047008
4020629 - 4027480
6852