About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4021299_4025544_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4021299 - 4025544
Intron Length:
4246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTGCC
5'SS Class:
major
3'SS Sequence:
TATTCCTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TATTCCTCTACA
Flanking Amino Acid:
HLVEYLRGTNEKVQKELDAV
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
67.6
35.8
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
83.5
0.75
0.8
77.2
31.2
Minor 5ss
40.2
-1.1
3
50
41.8
Minor BPS
64.1
0.44
1.9
77.11
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021716
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047008
4020629 - 4027480
6852