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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4032592_4033787_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4032592 - 4033787
Intron Length:
1196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTATT
5'SS Class:
strong_major
3'SS Sequence:
CTCCCATCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TCTCTCCCATCT
Flanking Amino Acid:
FQFNCDLLMKMAKIHGNVFT
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1
85.4
30.8
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
75.7
0.58
0.8
68.5
30.7
Minor 5ss
47.8
-0.2
2.5
68.9
41.7
Minor BPS
44.6
-0.3
2
66.08
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020476
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017075
4032421 - 4045527
13107