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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4033951_4034420_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
4033951 - 4034420
Intron Length:
470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGACTT
5'SS Class:
major
3'SS Sequence:
TGAATGGATTTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAAATAT
U12 Branch Point Sequence:
TCTTCCTTGAAT
Flanking Amino Acid:
PFFRAMAKGKGIMLATGHTW
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
0.9
73.3
37.4
Major BPS
59.7
0.24
1.1
55.7
39.9
Major PPT
55.5
0.12
1.1
51.5
47
Minor 5ss
38.5
-1.3
3.3
56
48.1
Minor BPS
77.7
0.95
1.3
88.47
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020476
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017075
4032421 - 4045527
13107