Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4034571_4036422_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4034571 - 4036422

Intron Length:

1852

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACCACTG

5'SS Class:

major

3'SS Sequence:

GTTATGGTTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTTAT

U12 Branch Point Sequence:

GTGACATTTATT

Flanking Amino Acid:

YLVEFFASMKENPLDPSFPL

Intron Amino Acid Position:

162

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.5

0.39

1.2

57.5

47.2

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

72.9

0.51

1.1

65.3

45.4

Minor 5ss

-1.1

3.4

56.6

47.5

Minor BPS

48.3

-0

1.9

66.8

43.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020476

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017075

4032421 - 4045527

13107