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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4038272_4040708_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4038272 - 4040708
Intron Length:
2437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTATTGTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATTG
Flanking Amino Acid:
IDFYLAHIEKSKDEPRSTYN
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
88.1
25.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
85.8
0.81
0.9
80.8
36.6
Minor 5ss
40.3
-1.1
3.4
58.5
40.4
Minor BPS
68.9
0.45
1.6
74.56
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020476
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017075
4032421 - 4045527
13107