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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4040851_4043170_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4040851 - 4043170
Intron Length:
2320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TCCACCTGAAAT
Flanking Amino Acid:
IYMVANPDIQEKVQKELDAV
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.2
35.1
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
82.2
0.73
0.8
76.9
31.5
Minor 5ss
29.8
-2.3
3.3
38.8
46.3
Minor BPS
56.9
0.3
1.7
71.04
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020476
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017075
4032421 - 4045527
13107