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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4058582_4059353_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4058582 - 4059353
Intron Length:
772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATTT
5'SS Class:
strong_major
3'SS Sequence:
GGAATGCTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TGACAAATAATA
Flanking Amino Acid:
PFFRAMAKGKGIILASGRSW
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.7
86.7
23
Major BPS
80
0.75
1
78.6
31
Major PPT
60.1
0.23
1
54.4
45.5
Minor 5ss
38.4
-1.3
3.3
55.7
48.5
Minor BPS
43.4
-0.5
1.9
54.54
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031186
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017146
4046688 - 4065671
18984