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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4061700_4062094_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4061700 - 4062094
Intron Length:
395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCATCATCTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATCCTCACCT
Flanking Amino Acid:
IDFYLAEIEKSKDEDKPKYD
Intron Amino Acid Position:
283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
77.5
0.62
0.9
74.2
35.3
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
65.9
0.58
1.8
85.42
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031186
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017146
4046688 - 4065671
18984