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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4063341_4064207_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4063341 - 4064207
Intron Length:
867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGACA
5'SS Class:
major
3'SS Sequence:
TTCTTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTCAA
U12 Branch Point Sequence:
GTCAATAGAAAT
Flanking Amino Acid:
TELLGFPVKKGTIVLPNIAS
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
65.8
39.7
Major BPS
67.8
0.44
1.1
69.6
37.5
Major PPT
89.5
0.89
0.6
84.7
23
Minor 5ss
30.8
-2.2
3.3
40.8
45.2
Minor BPS
39.8
-0.6
1.8
54.04
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031186
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017146
4046688 - 4065671
18984