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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4064350_4065492_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4064350 - 4065492
Intron Length:
1143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TAGATATTCACT
Flanking Amino Acid:
NREAFLPFSAGHRVCLGEHL
Intron Amino Acid Position:
440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
89.3
0.88
0.6
84.8
22.8
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
47.1
-0.1
2
66.68
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031186
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017146
4046688 - 4065671
18984