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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4077882_4078332_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4077882 - 4078332
Intron Length:
451

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAAAGGG
5'SS Class:
major
3'SS Sequence:
TCTTTTTGTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAA
U12 Branch Point Sequence:
TTGTCTTTCTTT
Flanking Amino Acid:
MALWSLDAALISLMFLNNQR
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.8
0.4
1
51.9
39.3
Major BPS
72
0.55
1.1
63.4
44.3
Major PPT
86.2
0.81
0.8
80.2
37.3
Minor 5ss
23.9
-3
3.2
26.1
39
Minor BPS
43.4
-0.4
3.5
74.92
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018395
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030550
4077852 - 4078717
866