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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4107959_4108240_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4107959 - 4108240
Intron Length:
282

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
GCCCCCTTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTGAG
U12 Branch Point Sequence:
GGCAGCTGAGGC
Flanking Amino Acid:
ETSQAVPLIGKYLTFLMVVT
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
28.8
Major BPS
47.4
-0.1
1.5
42.8
41.8
Major PPT
70.7
0.47
0.8
64.1
31
Minor 5ss
34.7
-1.7
3.2
43.7
38.1
Minor BPS
35.3
-1.1
2
37.48
39.8

Associated Gene:

Gene:
CHRNG
Ensembl Gene ID:
ENSAPLG00000019862
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020056
4107449 - 4112146
4698