Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4110249_4110425_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4110249 - 4110425

Intron Length:

177

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGACCT

5'SS Class:

major

3'SS Sequence:

TCCCCTTGCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCGTGAC

U12 Branch Point Sequence:

AGCGCCGTGACC

Flanking Amino Acid:

TLTTNVWIEMQWSDYRLRWD

Intron Amino Acid Position:

129

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.2

0.67

0.9

66.9

38.2

Major BPS

48.6

-0

1.2

40.4

Major PPT

70.9

0.47

0.9

63.9

36.7

Minor 5ss

29.3

-2.4

3.1

37.8

40.6

Minor BPS

-0.2

2.1

56.35

42.5

Associated Gene:

Gene:

CHRNG

Ensembl Gene ID:

ENSAPLG00000019862

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020056

4107449 - 4112146

4698