Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4110471_4110626_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4110471 - 4110626

Intron Length:

156

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGACCC

5'SS Class:

major

3'SS Sequence:

CCTTGCTTGCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCTAAA

U12 Branch Point Sequence:

GATGGCTAAAGC

Flanking Amino Acid:

KLTLTNLISLNEREETLTTN

Intron Amino Acid Position:

114

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.8

0.63

61.3

37.5

Major BPS

52.4

0.06

1.3

55.6

40.2

Major PPT

71.7

0.49

64.7

41.3

Minor 5ss

27.9

-2.5

2.9

32.1

35.6

Minor BPS

42.1

-0.6

2.3

51.63

45.4

Associated Gene:

Gene:

CHRNG

Ensembl Gene ID:

ENSAPLG00000019862

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020056

4107449 - 4112146

4698