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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4112147_4112231_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4112147 - 4112231
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGGGCC
5'SS Class:
major
3'SS Sequence:
GCTCCCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCCAC
U12 Branch Point Sequence:
TGCTCCTGGCTC
Flanking Amino Acid:
HMREKNSYNEEKDNWNRVAR
Intron Amino Acid Position:
457

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
65.5
34.2
Major BPS
48.9
-0
1.3
58.1
40.4
Major PPT
70.9
0.47
0.8
61.5
34.9
Minor 5ss
23.6
-3
3.5
32.2
42.8
Minor BPS
40.2
-0.7
3.4
58.79
40.8

Associated Gene:

Gene:
CHRND
Ensembl Gene ID:
ENSAPLG00000028659
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028884
4111964 - 4115835
3872