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Intron Name: Anas_platyrhynchos_platyrhynchos_9_4112630_4112724_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

4112630 - 4112724

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGGGGG

5'SS Class:

strong_major

3'SS Sequence:

TCCTGTGCCCAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GACAGAA

U12 Branch Point Sequence:

GACACGGTGACG

Flanking Amino Acid:

THIMSDWVREVFLESLPRLL

Intron Amino Acid Position:

352

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.7

0.77

0.9

63.9

42.4

Major BPS

45.8

-0.2

1.1

38.7

32.4

Major PPT

58.1

0.18

1.1

55.5

39.3

Minor 5ss

23.2

-3.1

3.2

28.7

43.7

Minor BPS

-1

2.5

40.66

43.5

Associated Gene:

Gene:

CHRND

Ensembl Gene ID:

ENSAPLG00000028659

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038431

4111902 - 4115835

3934

ENSAPLT00000028884

4111964 - 4115835

3872