Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4113752_4113901_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4113752 - 4113901

Intron Length:

150

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGCTGGGG

5'SS Class:

major

3'SS Sequence:

TGTCCCCCCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTCAC

U12 Branch Point Sequence:

AGCCCCTCACCG

Flanking Amino Acid:

FDWQNCTLKFSSLAYNAQEI

Intron Amino Acid Position:

170

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

62.7

0.3

1.1

47.8

42.6

Major BPS

60.1

0.25

1.1

62.9

34.3

Major PPT

71.9

0.49

0.8

62.4

34.6

Minor 5ss

22.2

-3.2

3.4

29.3

43.3

Minor BPS

45.9

-0.4

1.9

48.49

44.5

Associated Gene:

Gene:

CHRND

Ensembl Gene ID:

ENSAPLG00000028659

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038431

4111902 - 4115835

3934

ENSAPLT00000028884

4111964 - 4115835

3872