About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4172761_4179565_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4172761 - 4179565
Intron Length:
6805

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAA
U12 Branch Point Sequence:
TACAGCTCACCG
Flanking Amino Acid:
RATSVYLVQKVIPMLPKLLC
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
70.1
0.5
1.1
69.9
35.3
Major PPT
88.5
0.87
0.7
80.8
31.2
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
41
-0.8
2.2
45.34
46.5

Associated Gene:

Gene:
DIS3L2
Ensembl Gene ID:
ENSAPLG00000012888
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013450
4138734 - 4233102
94369