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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4264052_4268150_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4264052 - 4268150
Intron Length:
4099

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTGTA
5'SS Class:
major
3'SS Sequence:
CCTCTTTGACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TCCTCTTTGACT
Flanking Amino Acid:
KYHEAFIPSPDGTRDIFIDG
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
75.6
34.3
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
66.7
0.38
1
61.9
38.7
Minor 5ss
38.5
-1.3
3.3
54.7
43.6
Minor BPS
75.4
0.88
1.2
82.51
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023312
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025905
4263893 - 4274348
10456