Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4316219_4317665_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4316219 - 4317665

Intron Length:

1447

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGGGTACA

5'SS Class:

strong_major

3'SS Sequence:

TCTTCTTGGCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAT

U12 Branch Point Sequence:

TGCTGATTCACT

Flanking Amino Acid:

HRTQQQVEMEVTNIKKTLKA

Intron Amino Acid Position:

158

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

0.9

76.7

33.9

Major BPS

76.2

0.65

1.1

65.3

43.7

Major PPT

73.2

0.52

1.1

68.7

Minor 5ss

29.2

-2.4

2.8

33.9

41.6

Minor BPS

46.5

-0.1

2.4

69.56

46.9

Associated Gene:

Gene:

COPS7B

Ensembl Gene ID:

ENSAPLG00000012548

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033565

4316060 - 4326137

10078

ENSAPLT00000013066

4316060 - 4322764

6705