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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4317772_4319043_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4317772 - 4319043
Intron Length:
1272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGCTG
5'SS Class:
major
3'SS Sequence:
TTGTGTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
GAACCCATAAAT
Flanking Amino Acid:
ISNIVKTLQEWCDGCEAVLL
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
62.2
43.8
Major BPS
79
0.72
1
69
38.9
Major PPT
83
0.74
0.9
77.3
37
Minor 5ss
29.1
-2.4
3.3
35.3
42.3
Minor BPS
51.5
0.13
1.7
67.77
41.4

Associated Gene:

Gene:
COPS7B
Ensembl Gene ID:
ENSAPLG00000012548
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033565
4316060 - 4326137
10078
ENSAPLT00000030972
4312530 - 4322764
10235
ENSAPLT00000013066
4316060 - 4322764
6705