Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4319912_4321297_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4319912 - 4321297

Intron Length:

1386

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGAGAC

5'SS Class:

strong_major

3'SS Sequence:

TTAATGTTAACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

ATCTTTTTAATG

Flanking Amino Acid:

FAYGTYPDYVANKDNLPELT

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.9

0.96

0.8

78.6

28.9

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

0.47

1.1

65.9

Minor 5ss

30.7

-2.2

3.3

40.8

45.7

Minor BPS

66.6

0.38

1.3

64.47

38.5

Associated Gene:

Gene:

COPS7B

Ensembl Gene ID:

ENSAPLG00000012548

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030972

4312530 - 4322764

10235

ENSAPLT00000033565

4316060 - 4326137

10078