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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4357381_4361728_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4357381 - 4361728
Intron Length:
4348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTGCG
5'SS Class:
strong_major
3'SS Sequence:
ATCTGTTTGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
GCTTGTTTATCT
Flanking Amino Acid:
DLSVPGVEHEARVPKKILKC
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1.1
69.7
41.3
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
72.6
0.51
1
68.3
41.7
Minor 5ss
38.5
-1.3
3.1
50.4
46
Minor BPS
52.3
0.15
2
71.96
45.3

Associated Gene:

Gene:
PDE6D
Ensembl Gene ID:
ENSAPLG00000012446
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012952
4353918 - 4364513
10596