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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4361855_4362723_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4361855 - 4362723
Intron Length:
869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTACTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTCTTTTTACTT
Flanking Amino Acid:
KVYFKGQCLEEWFFEFGFVI
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
75
33.4
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
90.1
0.9
0.7
85
29.3
Minor 5ss
40
-1.1
3
53.2
44.1
Minor BPS
63.3
0.49
1.6
78.3
39.3

Associated Gene:

Gene:
PDE6D
Ensembl Gene ID:
ENSAPLG00000012446
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012952
4353918 - 4364513
10596