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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4435105_4435438_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4435105 - 4435438
Intron Length:
334

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTAAC
5'SS Class:
major
3'SS Sequence:
ACTGTTGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAACAC
U12 Branch Point Sequence:
ACTTACTGTACT
Flanking Amino Acid:
EDEEDEEDDSEEEEEPAMPV
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
74.1
36.5
Major BPS
53.3
0.08
1.1
61.3
34.4
Major PPT
75.7
0.58
1
69.1
41.3
Minor 5ss
34.8
-1.7
3
41.6
39.5
Minor BPS
50
0.08
2
72.4
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012897
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013467
4433705 - 4440944
7240