About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4436037_4436248_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4436037 - 4436248
Intron Length:
212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTATCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
TGTTCTCTATCA
Flanking Amino Acid:
DEDEEESEDEKPVKEAPGKR
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.8
0.9
83
23.9
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
81.4
0.71
0.8
76.4
30.7
Minor 5ss
40
-1.1
2.9
49.4
41.3
Minor BPS
56.2
0.19
1.9
72.85
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012897
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013467
4433705 - 4440944
7240