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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4436342_4436575_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4436342 - 4436575
Intron Length:
234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATTTGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTGCCTTACAC
Flanking Amino Acid:
AKKKKTEKTEAPASAFSLFM
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
67.2
38.1
Major BPS
100
1.24
0.5
100
0
Major PPT
78.7
0.65
1
80
31.2
Minor 5ss
26.2
-2.7
3.2
34.3
42
Minor BPS
55.8
0.16
1.9
67.09
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012897
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013467
4433705 - 4440944
7240