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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4437962_4438049_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4437962 - 4438049
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATTTC
5'SS Class:
major
3'SS Sequence:
GTTTCTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAA
U12 Branch Point Sequence:
TCTCTCCAAACC
Flanking Amino Acid:
GEKSQQENQKGGGERESKTL
Intron Amino Acid Position:
459

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
75.8
34.9
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
85.2
0.79
0.7
81.1
30.9
Minor 5ss
43
-0.8
3.2
61.2
43.7
Minor BPS
48.4
-0.1
2
63.96
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012897
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013467
4433705 - 4440944
7240