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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4439567_4439771_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4439567 - 4439771
Intron Length:
205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
ATCTCTTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
CTTGCCCTAATC
Flanking Amino Acid:
GGRGGGRGFGGRGGGFRGGR
Intron Amino Acid Position:
675

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
77.7
0.62
0.8
70.2
35.8
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
59.6
0.28
1.8
70.63
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012897
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013467
4433705 - 4440944
7240